Herakles (1962) • Game in the Sand (1964) • The Unprecedented Defence of the Fortress Deutschkreuz (1967) • Last Words (1967) • Signs of Life (1968) • The Flying Doctors of East Africa (1969) • Precautions Against Fanatics (1969)
Even Dwarfs Started Small (1970) • Handicapped Future (1971) • Land of Silence and Darkness (1971) • Fata Morgana (1971) • Aguirre, the Wrath of God (1972) • The Great Ecstasy of Woodcarver Steiner (1974) • The Enigma of Kaspar Hauser (1974) • Heart of Glass (1976) • No One Will Play with Me (1976) • How Much Wood Would a Woodchuck Chuck (1976) • Stroszek (1977) • La Soufrière (1977) • Nosferatu the Vampyre (1978) • Woyzeck (1978)
Huie's Sermon (1981) • God's Angry Man (1981) • Fitzcarraldo (1982) • Ballad of the Little Soldier (1984) • The Dark Glow of the Mountains (1984) • Where the Green Ants Dream (1984) • Portrait Werner Herzog (1986) • Cobra Verde (1987) • The French as Seen By... (1988) • Wodaabe - Herdsmen of the Sun (1989)
Film Lesson 1-4 (1990) • Echoes from a Somber Empire (1990) • Jag Mandir (1991) • Scream of Stone (1991) • Lessons of Darkness (1992) • Bells from the Deep (1993) • The Transformation of the World into Music (1994) • Death for Five Voices (1995) • Little Dieter Needs to Fly (1997) • The Lord and the Laden (1999) • My Best Fiend (1999)
Wings of Hope (2000) • Invincible (2001) • Pilgrimage (2001) • Ten Thousand Years Older (2002) • Wheel of Time (2003) • The White Diamond (2004) • Grizzly Man (2005) • The Wild Blue Yonder (2005) • Rescue Dawn (2007) • Encounters at the End of the World (2007) • Bad Lieutenant: Port of Call New Orleans (2009) • My Son, My Son, What Have Ye Done? (2009)
Cave of Forgotten Dreams (2010)